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<extension xmlns="http://rs.gbif.org/extension/"
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" 
    xmlns:dc="http://purl.org/dc/terms/"    
    xmlns:dwc="http://rs.tdwg.org/dwc/terms/"    
    xmlns:ggbn="http://data.ggbn.org/schemas/ggbn/terms/"    
    xsi:schemaLocation="http://rs.gbif.org/extension/ http://rs.gbif.org/schema/extension.xsd"
    dc:title="GGBN Amplification Extension" 
    name="Amplification" namespace="http://data.ggbn.org/schemas/ggbn/terms/" rowType="http://data.ggbn.org/schemas/ggbn/terms/Amplification"
    dc:issued="2016-01-13"
    dc:subject=""
    dc:relation="http://terms.tdwg.org/wiki/GGBN_Amplification_Vocabulary"
    dc:description="Support for DNA Amplifications as an extension for Material Sample core sample data in Darwin Core. Intended to be a one to many relation to the Material Sample core.">

    <property group='Amplification' name='amplificationDate' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/amplificationDate' dc:relation='http://terms.tdwg.org/wiki/ggbn:amplificationDate' dc:description='Date when the amplification was carried out' examples='2008-10-17, May 2007' required='false'/>
    <property group='Amplification' name='amplificationStaff' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/amplificationStaff' dc:relation='http://terms.tdwg.org/wiki/ggbn:amplificationStaff' dc:description='Person or Institution who performed the amplification' examples='Jon Doe, NMNH' required='false'/>
    <property group='Amplification' name='amplificationSuccess' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/amplificationSuccess' dc:relation='http://terms.tdwg.org/wiki/ggbn:amplificationSuccess' dc:description='true/false or yes/no whether the ampliciation was successful in general; highly recommended to report unsuccessful runs' examples='yes, no, true, false' required='false'/>
    <property group='Amplification' name='amplificationSuccessDetails' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/amplificationSuccessDetails' dc:relation='http://terms.tdwg.org/wiki/ggbn:amplificationSuccessDetails' dc:description='Details about the amplification, e.g. including why it has failed' examples='' required='false'/>
    <property group='Amplification' name='amplificationMethod' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/amplificationMethod' dc:relation='http://terms.tdwg.org/wiki/ggbn:amplificationMethod' dc:description='Method used for amplification' examples='' required='false'/>
    <property group='Amplification' name='primerSequenceForward' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/primerSequenceForward' dc:relation='http://terms.tdwg.org/wiki/ggbn:primerSequenceForward' dc:description='Sequence of forward primer used for this amplification' examples='' required='false'/>
    <property group='Amplification' name='primerNameForward' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/primerNameForward' dc:relation='http://terms.tdwg.org/wiki/ggbn:primerNameForward' dc:description='Name of forward primer used for this amplification' examples='' required='false'/>
    <property group='Amplification' name='primerReferenceCitationForward' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/primerReferenceCitationForward' dc:relation='http://terms.tdwg.org/wiki/ggbn:primerReferenceCitationForward' dc:description='First reference of the primer' examples='' required='false'/>
    <property group='Amplification' type='uri' name='primerReferenceLinkForward' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/primerReferenceLinkForward' dc:relation='http://terms.tdwg.org/wiki/ggbn:primerReferenceLinkForward' dc:description='Link to the first reference of the primer' examples='' required='false'/>
    <property group='Amplification' name='primerSequenceReverse' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/primerSequenceReverse' dc:relation='http://terms.tdwg.org/wiki/ggbn:primerSequenceReverse' dc:description='Sequence of reverse primer used for this amplification' examples='' required='false'/>
    <property group='Amplification' name='primerNameReverse' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/primerNameReverse' dc:relation='http://terms.tdwg.org/wiki/ggbn:primerNameForward' dc:description='Name of reverse primer used for this amplification' examples='' required='false'/>
    <property group='Amplification' name='primerReferenceCitationReverse' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/primerReferenceCitationReverse' dc:relation='http://terms.tdwg.org/wiki/ggbn:primerReferenceCitationReverse' dc:description='First reference of the primer' examples='' required='false'/>
    <property group='Amplification' type='uri' name='primerReferenceLinkReverse' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/primerReferenceLinkReverse' dc:relation='http://terms.tdwg.org/wiki/ggbn:primerReferenceURIForward' dc:description='Link to the first reference of the primer' examples='' required='false'/>
    <property group='Amplification' name='purificationMethod' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/purificationMethod' dc:relation='http://terms.tdwg.org/wiki/ggbn:purificationMethod' dc:description='Method or protocol used to purify the PCR product' examples='' required='false'/>
    <property group='Amplification' name='consensusSequence' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/consensusSequence' dc:relation='http://terms.tdwg.org/wiki/ggbn:consensusSequence' dc:description='Consensus sequence derived from all individual sequences' examples='' required='false'/>
    <property group='Amplification' type='integer' name='consensusSequenceLength' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/consensusSequenceLength' dc:relation='http://terms.tdwg.org/wiki/ggbn:consensusSequenceLength' dc:description='Length of the consensus sequence (number of base pairs)' examples='697' required='false'/>
    <property group='Amplification' type='uri' name='consensusSequenceChromatogramFileURI' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/consensusSequenceChromatogramFileURI' dc:relation='http://terms.tdwg.org/wiki/ggbn:consensusSequenceChromatogramFileURI' dc:description='Link to the chromatogram of the consensus sequence' examples='' required='false'/>
    <property group='Amplification' name='barcodeSequence' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/barcodeSequence' dc:relation='http://terms.tdwg.org/wiki/ggbn:barcodeSequence' dc:description='DNA Barcode sequence (part or 100% of the consensus sequence)' examples='' required='false'/>
    <property group='Amplification' name='haplotype' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/haplotype' dc:relation='http://terms.tdwg.org/wiki/ggbn:haplotype' dc:description='Name of the haplotype, if applicable' examples='' required='false'/>
    <property group='Amplification' name='marker' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/marker' dc:relation='http://terms.tdwg.org/wiki/ggbn:marker' dc:description='Genetic locus/marker or DNA fragment amplified by PCR' examples='COI, rbcL' required='false'/>
    <property group='Amplification' name='markerSubfragment' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/markerSubfragment' dc:relation='http://terms.tdwg.org/wiki/ggbn:markerSubfragment' dc:description='Name of subfragment of a gene or locus. Important to e.g. identify special regions on marker genes' examples='V6' required='false'/>
    <property group='Amplification' name='geneticAccessionNumber' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/geneticAccessionNumber' dc:relation='http://terms.tdwg.org/wiki/ggbn:geneticAccessionNumber' dc:description='Definite number or ID under which the DNA sequence is deposited in a public database (GenBank/EMBL/DDBJ accession number)' examples='AJ675356' required='false'/>
    <property group='Amplification' name='BOLDProcessID' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/BOLDProcessID' dc:relation='http://terms.tdwg.org/wiki/ggbn:BOLDProcessID' dc:description='Definite number or ID under which the DNA sequence is deposited in the BOLD database' examples='KBPBK324-08' required='false'/>
    <property group='Amplification' type='uri' name='geneticAccessionURI' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/geneticAccessionURI' dc:relation='http://terms.tdwg.org/wiki/ggbn:geneticAccessionURI' dc:description='URI of the related record in a public database (GenBank/DDBJ/EMBL record).' examples='' required='false'/>
    <property group='Amplification' name='GC-content' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/GC-content' dc:relation='http://terms.tdwg.org/wiki/ggbn:GC-content' dc:description='guanine-cytosine content in mol %' examples='' required='false'/>       
    <property group='Amplification' name='chimera_check' namespace='http://gensc.org/ns/mixs/' qualName='http://gensc.org/ns/mixs/chimera_check' dc:relation='http://gensc.org/ns/mixs/#chimera_check' dc:description='A chimeric sequence, or chimera for short, is a sequence comprised of two or more phylogenetically distinct parent sequences. Chimeras are usually PCR artifacts thought to occur when a prematurely terminated amplicon reanneals to a foreign DNA strand and is copied to completion in the following PCR cycles. The point at which the chimeric sequence changes from one parent to the next is called the breakpoint or conversion point' examples='' required='false'/>
    <property group='Amplification' name='assembly' namespace='http://gensc.org/ns/mixs/' qualName='http://gensc.org/ns/mixs/assembly' dc:relation='http://gensc.org/ns/mixs/#assembly' dc:description='How was the assembly done (e.g. with a text based assembler like phrap or a flowgram assembler etc). Input: CV' examples='' required='false'/>
    <property group='Amplification' name='sop' namespace='http://gensc.org/ns/mixs/' qualName='http://gensc.org/ns/mixs/sop' dc:relation='http://gensc.org/ns/mixs/#sop' dc:description='Relevant standard operating procedures' examples='' required='false'/>
    <property group='Amplification' name='finishing_strategy' namespace='http://gensc.org/ns/mixs/' qualName='http://gensc.org/ns/mixs/finishing_strategy' dc:relation='http://gensc.org/ns/mixs/#finishing_strategy' dc:description='Was the genome project intended to produce a complete or draft genome, Coverage, the fold coverage of the sequencing expressed as 2x, 3x, 18x etc, and how many contigs were produced for the genome' examples='' required='false'/>
    <property group='Amplification' name='annot_source' namespace='http://gensc.org/ns/mixs/' qualName='http://gensc.org/ns/mixs/annot_source' dc:relation='http://gensc.org/ns/mixs/#annot_source' dc:description='For cases where annotation was provided by a community jamboree or model organism database rather than by a specific submitter' examples='' required='false'/>
    <property group='Amplification' name='markerAccordance' namespace='http://data.ggbn.org/schemas/ggbn/terms/' qualName='http://data.ggbn.org/schemas/ggbn/terms/markerAccordance' dc:relation='http://terms.tdwg.org/wiki/ggbn:markerAccordance' dc:description='Result of comparison of two markers of two specimens or strains. Name or TAX-ID (NCBI) of compared specimens/strain and the relative identity percentage must be given' examples='' required='false'/>
    <property group='Amplification' name='seq_quality_check' namespace='http://gensc.org/ns/mixs/' qualName='http://gensc.org/ns/mixs/seq_quality_check' dc:relation='http://gensc.org/ns/mixs/#seq_quality_check' dc:description='Indicate if the sequence has been called by automatic systems (none) or undergone a manual editing procedure (e.g. by inspecting the raw data or chromatograms). Applied only for sequences that are not submitted to SRA or DRA e.g. none or manually edited' examples='' required='false'/>
    <property group='Amplification' name='adapters' namespace='http://gensc.org/ns/mixs/' qualName='http://gensc.org/ns/mixs/adapters' dc:relation='http://gensc.org/ns/mixs/#adapters' dc:description='Adapters provide priming sequences for both amplification and sequencing of the sample-library fragments. Both adapters should be reported; in uppercase letters' examples='' required='false'/>
    <property group='Amplification' name='mid' namespace='http://gensc.org/ns/mixs/' qualName='http://gensc.org/ns/mixs/mid' dc:relation='http://gensc.org/ns/mixs/#mid' dc:description='Molecular barcodes, called Multiplex Identifiers (MIDs), that are used to specifically tag unique samples in a sequencing run. Sequence should be reported in uppercase letters' examples='' required='false'/>
</extension>